PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_17354_BGI-A2_v1.0
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MIKC_MADS
Protein Properties Length: 197aa    MW: 23004.3 Da    PI: 8.7835
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_17354_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF92.91.5e-29959151
                                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                                krien+snrqvt+skRrngi+KKA+E+ vLCda+v++iif+s+gk++ey+s
  Cotton_A_17354_BGI-A2_v1.0  9 KRIENSSNRQVTYSKRRNGIMKKAKEITVLCDAKVSLIIFASSGKMHEYCS 59
                                79***********************************************96 PP

2K-box68.91.7e-2371135165
                       K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkki 65 
                                 yqk+sgk+l++ak+e+l++e++++kke++++q e+Rhl+Ged++sL +keL+ Le++Le++l+  
  Cotton_A_17354_BGI-A2_v1.0  71 YQKTSGKKLWDAKHENLSNEIDRIKKENDSMQIELRHLKGEDITSLPYKELMALEDALENGLTCT 135
                                 899***********************************************************976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004329.4E-41160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.534161IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.41E-37296IPR002100Transcription factor, MADS-box
CDDcd002656.75E-43280No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004047.8E-29323IPR002100Transcription factor, MADS-box
PfamPF003195.0E-231057IPR002100Transcription factor, MADS-box
PRINTSPR004047.8E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004047.8E-293859IPR002100Transcription factor, MADS-box
PfamPF014862.9E-1382135IPR002487Transcription factor, K-box
PROSITE profilePS5129710.49184180IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010093Biological Processspecification of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MGRGKIEIKR IENSSNRQVT YSKRRNGIMK KAKEITVLCD AKVSLIIFAS SGKMHEYCSP  60
STKLIDILDQ YQKTSGKKLW DAKHENLSNE IDRIKKENDS MQIELRHLKG EDITSLPYKE  120
LMALEDALEN GLTCTKFLEE DNKQLNFIVN QQQLTYENVR EHMDHHGYHR AARADFNSQM  180
PFAFRVQPMQ PNLQERM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3kov_A7e-17289180Myocyte-specific enhancer factor 2A
3kov_B7e-17289180Myocyte-specific enhancer factor 2A
3kov_I7e-17289180Myocyte-specific enhancer factor 2A
3kov_J7e-17289180Myocyte-specific enhancer factor 2A
3mu6_A6e-17260159Myocyte-specific enhancer factor 2A
3mu6_B6e-17260159Myocyte-specific enhancer factor 2A
3mu6_C6e-17260159Myocyte-specific enhancer factor 2A
3mu6_D6e-17260159Myocyte-specific enhancer factor 2A
3p57_A7e-17289180Myocyte-specific enhancer factor 2A
3p57_B7e-17289180Myocyte-specific enhancer factor 2A
3p57_C7e-17289180Myocyte-specific enhancer factor 2A
3p57_D7e-17289180Myocyte-specific enhancer factor 2A
3p57_I7e-17289180Myocyte-specific enhancer factor 2A
3p57_J7e-17289180Myocyte-specific enhancer factor 2A
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00080ChIP-seqTransfer from AT5G20240Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ4098690.0FJ409869.1 Gossypium hirsutum MADS-12 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012482533.11e-144PREDICTED: floral homeotic protein PMADS 2-like
SwissprotQ033786e-99GLOB_ANTMA; Floral homeotic protein GLOBOSA
TrEMBLA0A0D2N9L71e-143A0A0D2N9L7_G
STRINGVIT_18s0001g01760.t011e-105(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53002751
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20240.14e-83MIKC_MADS family protein